nextclade:tldr:cfe7d
nextclade: Create a TSV report, auto-downloading the latest [d]ataset.
$ nextclade run -d ${dataset_name} ${path-to-fasta} -t ${path-to-output_tsv}
try on your machine
The command you provided is using the "nextclade" tool to run a sequence analysis on a dataset specified by the variable ${dataset_name} and a FASTA file located at ${path-to-fasta}. The analysis results will be saved in a TSV (tab-separated values) file at ${path-to-output_tsv}.
Here is a breakdown of the command's options and arguments:
nextclade run: This instructs the nextclade tool to perform a sequence analysis.-d ${dataset_name}: This specifies the name of the dataset to be analyzed.${dataset_name}is a variable that should be replaced with the actual name of the dataset.${path-to-fasta}: This is the path to the input FASTA file containing the genetic sequences that will be analyzed.${path-to-fasta}should be replaced with the actual file path.-t ${path-to-output_tsv}: This option specifies the path where the analysis results will be saved in the form of a TSV file.${path-to-output_tsv}is a variable that should be substituted with the desired file path.
In summary, this command runs the nextclade tool on a specified dataset and FASTA file, saving the analysis results in a TSV file at the specified path.
This explanation was created by an AI. In most cases those are correct. But please always be careful and
never run a command you are not sure if it is safe.