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mashtree

List of commands for mashtree:

  • mashtree:tldr:87cfc mashtree: Most accurate method in mashtree to create a tree from fastq and/or fasta files using multiple threads, piping into a newick file.
    $ mashtree --mindepth ${0} --numcpus ${12} ${*-fastq-gz} ${*-fasta} > ${mashtree-dnd}
    try on your machine
    explain this command
  • mashtree:tldr:cef94 mashtree: Fastest method in mashtree to create a tree from fastq and/or fasta files using multiple threads, piping into a newick file.
    $ mashtree --numcpus ${12} ${*-fastq-gz} ${*-fasta} > ${mashtree-dnd}
    try on your machine
    explain this command
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