mate-search-tool

The mate-search-tool is a command line tool used for searching and analyzing DNA or RNA sequence data. It is primarily designed for finding specific motifs or patterns within sequences. The tool utilizes a backtracking algorithm to efficiently search for matches to a given pattern. It supports regular expressions, allowing for complex pattern matching. The mate-search-tool supports both single sequence searching and batch searching of multiple sequences. It provides extensive options for controlling the search parameters, such as setting limits on the number of matches or the maximum allowed number of mismatches. The tool also generates detailed reports of the search results, including the position of each match and any associated statistics. Overall, the mate-search-tool is a powerful and versatile tool for sequence analysis and motif discovery.