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On this page you find all important commands for the CLI tool nf-core. If the command you are looking for is missing please ask our AI.


NF-Core is a command line tool designed to make it easy for researchers to develop and share bioinformatics pipelines. It provides a framework for creating and running these pipelines, making them reproducible and scalable. It was developed by the Nextflow community, a group of bioinformaticians and software engineers dedicated to improving the computational workflow environment for genomics research. NF-Core follows a standardized format for workflow definitions, allowing users to easily understand and modify pipelines based on their specific needs. The tool also includes a collection of pre-built pipelines, covering a wide range of analysis tasks, from variant calling to single-cell RNA sequencing. These pipelines are continuously tested and improved, ensuring high-quality and reliable results. NF-Core integrates with other popular bioinformatics tools and software, making it highly customizable and versatile. It supports different computing environments, allowing users to run pipelines on their local machines, high-performance clusters, cloud platforms, or a combination of these. Additionally, NF-Core includes comprehensive documentation and user guides, making it accessible to researchers with varying levels of bioinformatics expertise. Overall, NF-Core simplifies the development and sharing of bioinformatics pipelines, accelerating research and promoting collaboration within the genomics community.

List of commands for nf-core:

tool overview