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blastp

List of commands for blastp:

  • blastp:tldr:24a68 blastp: Search protein databases using a protein query, 16 threads to use in the BLAST search, with a maximum number of 10 aligned sequences to keep.
    $ blastp -query ${query-fa} -db ${blast_database_name} -num_threads ${16} -max_target_seqs ${10}
    try on your machine
    explain this command
  • blastp:tldr:404b0 blastp: Align two or more sequences, custom tabular output format, output to file.
    $ blastp -query ${query-fa} -subject ${subject-fa} -outfmt '${6 qseqid qlen qstart qend sseqid slen sstart send bitscore evalue pident}' -out ${output-tsv}
    try on your machine
    explain this command
  • blastp:tldr:5466c blastp: Search the remote non-redundant protein database using a protein query.
    $ blastp -query ${query-fa} -db ${nr} -remote
    try on your machine
    explain this command
  • blastp:tldr:92bca blastp: Align two or more sequences using blastp-fast.
    $ blastp -task blastp-fast -query ${query-fa} -subject ${subject-fa}
    try on your machine
    explain this command
  • blastp:tldr:be4e3 blastp: Display help (use `-help` for detailed help).
    $ blastp -h
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    explain this command
  • blastp:tldr:cbe7a blastp: Align two or more sequences using blastp, with the e-value threshold of 1e-9, pairwise output format, output to screen.
    $ blastp -query ${query-fa} -subject ${subject-fa} -evalue ${1e-9}
    try on your machine
    explain this command
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